Cts the time at which the EventAssignment’s math expression is
Cts the time at which the EventAssignment’s math expression is evaluated. In other words, SBML enables decoupling the time at which the variable is assigned from the time at which its value expression is calculated. The AAT-007 optional sboTerm attribute on EventAssignment: EventAssignment has an optional sboTerm attribute of variety sboTerm (see Sections 3..9 and five). When a worth is offered to this attribute, it ought to be a valid SBO term identifier referring to a mathematical expression (i.e terms derived from SBO:0000064, “mathematical expression”). The EventAssignment need to have an “is a” partnership with the SBO term, as well as the term really should be the PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/19054792 most precise (narrow) term that captures the type of the assignment formula within the model. EventAssignment’s math: The math element contains a MathML expression that defines the new value on the object identified by the variable. The time at which this expression is evaluated is determined by Event’suseValuesFromTriggerTime attribute. In the event the attribute value is ” true” (the default), theAuthor Manuscript Author Manuscript Author Manuscript Author Manuscriptexpression has to be evaluated when the occasion is fired; far more precisely, the values of identifiers occurring in MathML ci attributes in the EventAssignment’s math expression would be the values they’ve at the point when the event fired. If, instead, useValuesFromTriggerTime’s worth is ” false”, it implies the values at execution time need to be utilised; that may be, the values of identifiers occurring in MathML ci attributes inside the EventAssignment’s math expression will be the values they have at the point when the event executed. Units of your math formula in EventAssignment: In all situations, as would be anticipated, the units from the formula contained inside the math element of EventAssignment should be constant together with the units of the object identified by the variable attribute. Much more precisely: In the case of a species, an EventAssignment sets the referenced species’ quantity (concentration or level of substance) towards the worth determined by the formula in math. The units on the math formula really should be identical towards the units from the species as defined in Section 4.eight.five. In the case of a compartment, an EventAssignment sets the referenced compartment’s size towards the size determined by the formula in math. The general units on the formula must be identical for the units specified for the size on the compartment identified by the value with the EventAssignment’s variable attribute. (See Section four.7.five for an explanation of how the units of your compartment’s size are determined.) Inside the case of a parameter, an EventAssignment sets the referenced parameter’s worth to that determined by the formula in math. The all round units of the formulaJ Integr Bioinform. Author manuscript; readily available in PMC 207 June 02.Hucka et al.Pageshould be identical for the units defined for the parameter identified by the value from the EventAssignment’s variable attribute. (See Section four.9.3 for an explanation of how the units in the parameter are determined.) Note that the formula placed within the math element has no assumed units. The consistency from the units on the formula, and also the units in the entity which the assignment impacts, really should be explicitly established just as within the case on the worth of delay. four.4.five Example Event definitionsA example of an Event object follows. This structure makes the assignment k2 0 in the point when P P2:Author Manuscript Author Manuscript Author Manuscript Author ManuscriptA complete exa.